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Filipe Inácio Matias, Italo Stefanine Correa Granato, Gabriel Dequigiovanni and Roberto Fritsche-Neto

Abstract: Be-Breeder is an application directed toward genetic breeding of
plants, developed through the Shiny package of the R software, which allows
different phenotype and molecular (marker) analysis to be undertaken. The
section for analysis of molecular data of the Be-Breeder application makes
it possible to achieve quality control of genotyping data, to obtain genomic
kinship matrices, and to analyze genomic selection, genome association, and
genetic diversity in a simple manner on line. This application is available for use
in a network through the site of the Allogamous Plant Breeding Laboratory of
ESALQ-USP (http://www.genetica.esalq.usp.br/alogamas/R.html).

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